Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SKCM rs9402659 chr6:135195889 G/A 9.96E-5 99 15.68 13.9 10.97 KM Plot
SKCM rs9483760 chr6:135172515 T/A 2.24E-5 97 15.87 13.07 11.73 KM Plot
SKCM rs9913963 chr17:40319316 A/G 3.05E-5 96 14.73 15.98 4.73 KM Plot
SKCM rs998505 chr12:63400018 C/T 1.82E-7 101 15.3 14.3 8.8 KM Plot
SKCM rs998506 chr12:63400017 C/T 1.82E-7 101 15.3 14.3 8.8 KM Plot
SKCM rs9989852 chr2:180839707 G/A 2.92E-5 101 9 13.72 15.3 KM Plot
STAD rs1003928 chr7:148983042 G/A 4.52E-5 405 14.22 16.38 3.43 KM Plot
STAD rs10056627 chr5:120187033 A/G 9.65E-8 406 2.03 14.35 14.27 KM Plot
STAD rs1015815 chr1:227453739 G/A 0 404 14.25 14.45 1.48 KM Plot
STAD rs1015816 chr1:227453878 C/T 0 404 14.25 14.45 1.48 KM Plot
STAD rs10283 chr8:17885406 C/G 4.32E-5 397 12.18 16.37 14.23 KM Plot
STAD rs10433859 chr4:15072329 C/G 7.55E-6 402 14.42 14.23 5.53 KM Plot
STAD rs10495258 chr1:227311310 C/T 0 404 14.42 14.15 1.48 KM Plot
STAD rs10495263 chr1:227259884 G/A 0 406 14.32 14.15 1.48 KM Plot
STAD rs10553573 chr7:30424839 CAAAA/C 3.33E-6 402 14.32 15.23 2.7 KM Plot